Organism Summary | |
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Catalog Number | ATCC® 10141™ |
Strain Alias | 42-765 A |
Isolation | Pea |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | September 5, 2023 |
Length | 35,508,233 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 11 (0 Circularized) |
N50 | 3,992,736 nt |
%GC | 52.58% |
Annotations Summary | |
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Number of BUSCO Annotations | 750 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 361,119 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 38,948,018 |
Illumina Mean Coverage Depth | 141.431× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 38,948,018 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 98.81% |
Average depth of coverage | 141.431× |