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  • Streptococcus equi
  • Streptococcus equi subsp. zooepidemicus

Streptococcus equi subsp. zooepidemicus (ATCC® 700400™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length2,074,411 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N502,074,411 nt
%GC41.8%
Organism Summary
NameATCC® 700400™
Genotype
Isolation
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS1,900
Number of Hypothetical Proteins786
Number of tRNA67
Number of 5s rRNA6
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count33,762
Oxford Nanopore Median Q Score25
Illumina Read Count4,313,344
Illumina Mean Coverage Depth475.305×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,313,344
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage475.305×
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