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  • Yersinia pseudotuberculosis complex
  • Yersinia pseudotuberculosis

Yersinia pseudotuberculosis (ATCC® 6904™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedDecember 20, 2019
Length4,808,535 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N504,805,775 nt
%GC47.6%
Organism Summary
NameATCC® 6904™
Genotype
Isolation
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS4,174
Number of Hypothetical Proteins1,444
Number of tRNA80
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count71,623
Oxford Nanopore Median Q Score24
Illumina Read Count6,008,862
Illumina Mean Coverage Depth235.473×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads6,008,862
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.87%
PassedEstimated genome contamination0.41%
PassedAverage depth of coverage235.473×
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