ATCC® BAA-1371™ | Mycobacterium crocinum

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1371™
Strain Alias	czh-3
Isolation	Soil; isolated June 2003
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	September 4, 2024
Length	6,311,210 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (3 Circularized)
N50	6,087,283 nt
%GC	66.52%

Annotations Summary
Number of CDS	6192
Number of Hypothetical Proteins	960
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	60,633
Oxford Nanopore Median Q Score	32
Illumina Read Count	11,300,746
Illumina Mean Coverage Depth	262.987×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	11,300,746
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0.57%
Illumina depth of coverage	262.987×
ONT depth of coverage	77.508×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions