ATCC® BAA-3248™ | Pseudomonas aeruginosa

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	7,011,772 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (1 Circularized)
Assembly Level	Chromosome
N50	6,874,720 nt
%GC	65.92%

Organism Summary
Name	ATCC® BAA-3248™
Isolation	Abscess
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	6,520
Number of Hypothetical Proteins	649
Number of tRNA	65
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	120,462
Oxford Nanopore Median Q Score	34
Illumina Read Count	9,993,606
Illumina Mean Coverage Depth	209.8×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,993,606

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.68%

PassedEstimated genome contamination0.43%

PassedAverage depth of coverage209.8×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Pseudomonas aeruginosa (ATCC® BAA-3248™)