ATCC® BAA-3248™ | Pseudomonas aeruginosa

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	7,011,772 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (1 Circularized)
N50	6,874,720 nt
%GC	65.92%

Annotations Summary
Number of CDS	6520
Number of Hypothetical Proteins	649
Number of tRNA	65
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	120,462
Oxford Nanopore Median Q Score	34
Illumina Read Count	9,993,606
Illumina Mean Coverage Depth	209.8×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	9,993,606
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.68%
Estimated genome contamination	0.43%
Illumina depth of coverage	209.8×
ONT depth of coverage	69.175×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions