ATCC® BAA-1777™ | Bartonella washoensis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	October 3, 2023
Length	1,947,034 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
Assembly Level	Chromosome
N50	1,932,948 nt
%GC	38.86%

Organism Summary
Name	ATCC® BAA-1777™
Isolation	Blood in which host exhibited meningitis and sepsis from Yuba County
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	1,642
Number of Hypothetical Proteins	270
Number of tRNA	42
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	562,073
Oxford Nanopore Median Q Score	14.6
Illumina Read Count	10,777,708
Illumina Mean Coverage Depth	817.954×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads10,777,708

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination0%

PassedAverage depth of coverage817.954×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Bartonella washoensis (ATCC® BAA-1777™)