Organism Summary | |
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Catalog Number | ATCC® BAA-691™ |
Strain Alias | MDA 5605 [NCTC 13290] |
Isolation | Blood; isolated August 6, 1999 |
Tags | Methylation DataType Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | July 17, 2024 |
Length | 4,607,434 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (1 Circularized) |
N50 | 3,571,032 nt |
%GC | 70.61% |
Annotations Summary | |
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Number of CDS | 4184 |
Number of Hypothetical Proteins | 484 |
Number of tRNA | 60 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 18,728 |
Oxford Nanopore Median Q Score | 32 |
Illumina Read Count | 10,288,458 |
Illumina Mean Coverage Depth | 325.916× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 10,288,458 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99% |
Estimated genome contamination | 0% |
Average depth of coverage | 325.916× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions