ATCC® TSD-501™ | Campylobacter porphyrionis subsp. avium

Overview

Genome Browser

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® TSD-501™
Strain Alias	B1978
Isolation	Cloacal swab of a North Island robin
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	August 20, 2026
Length	2,049,170 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (1 Circularized)
N50	1,200,121 nt
%GC	29.98%

Annotations Summary
Number of CDS	2092
Number of Hypothetical Proteins	406
Number of tRNA	44
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	301,985
Oxford Nanopore Median Q Score	41
Illumina Read Count	2,286,298
Illumina Mean Coverage Depth	274.937×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Microbes

0 out of 0 selected (Select All / Deselect All).

		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

Displaying Product

Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	2,286,298
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	98.82%
Estimated genome contamination	0.16%
Illumina depth of coverage	274.937×
ONT depth of coverage	607.098×

This bacterium was assembled, annotated, and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions