ATCC® 51964™ | Cellulomonas hominis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	4,499,696 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	11 (0 Circularized)
N50	2,295,781 nt
%GC	74.99%

Organism Summary
Name	ATCC® 51964™
Isolation	Cerebrospinal fluid
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	4219
Number of Hypothetical Proteins	708
Number of tRNA	68
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	101,419
Oxford Nanopore Median Q Score	26
Illumina Read Count	8,875,776
Illumina Mean Coverage Depth	288.995×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads8,875,776

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.84%

PassedEstimated genome contamination0.1%

PassedAverage depth of coverage288.995×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Cellulomonas hominis (ATCC® 51964™)