ATCC® 49771™ | Mycobacterium asiaticum

Overview

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Quality Control

Assembly Summary
Date Published	February 1, 2024
Length	6,018,609 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	6,018,609 nt
%GC	66.79%

Annotations Summary
Number of CDS	5538
Number of Hypothetical Proteins	591
Number of tRNA	48
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	368,401
Oxford Nanopore Median Q Score	27
Illumina Read Count	13,104,148
Illumina Mean Coverage Depth	318.948×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	13,104,148
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.94%
Estimated genome contamination	0.33%
Illumina depth of coverage	318.948×
ONT depth of coverage	598.431×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions