ATCC® VR-346™ | Chlamydia trachomatis Serovar F

Overview

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Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	1,089,796 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	10 (6 Circularized)
N50	1,042,420 nt
%GC	41.26%

Annotations Summary
Number of CDS	944
Number of Hypothetical Proteins	162
Number of tRNA	40
Number of 5s rRNA	3
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	162,220
Oxford Nanopore Median Q Score	35
Illumina Read Count	8,075,654
Illumina Mean Coverage Depth	277.83×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	8,075,654
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	96.18%
Estimated genome contamination	2.22%
Illumina depth of coverage	277.83×
ONT depth of coverage	208.427×

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions