Organism Summary | |
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Catalog Number | ATCC® TSD-172™ |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | April 2, 2022 |
Length | 4,868,312 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 4,868,312 nt |
%GC | 43.34% |
Annotations Summary | |
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Number of CDS | 4859 |
Number of Hypothetical Proteins | 792 |
Number of tRNA | 88 |
Number of 5s rRNA | 10 |
Number of 16s rRNA | 10 |
Number of 23s rRNA | 10 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 122,492 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 23,240,587 |
Illumina Mean Coverage Depth | 677.292× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 23,240,587 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.32% |
Estimated genome contamination | 3.69% |
Average depth of coverage | 677.292× |