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- Aspergillus subgen. Aspergillus
- Aspergillus amstelodami
Aspergillus amstelodami (ATCC® 16464™)
Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 3, 2024 |
| Length | 25,997,718 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 87 |
| Assembly Level | Scaffold |
| N50 | 538,062 nt |
| %GC | 49.1% |
| Organism Summary | |
|---|---|
| Name | ATCC® 16464™ |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 734 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 237,041 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 37,401,994 |
| Illumina Mean Coverage Depth | 200.447× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads37,401,994
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.07%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness96.9%
PassedAverage depth of coverage200.447×
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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