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  • unclassified Acidovorax
  • Acidovorax sp.

Acidovorax sp. (ATCC® BAA-1802™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedAugust 3, 2020
Length4,576,717 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs4 (2 Circularized)
Assembly SummaryChromosome
N504,441,082 nt
%GC66.09%
Organism Summary
NameATCC® BAA-1802™
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS4,320
Number of Hypothetical Proteins2,033
Number of tRNA53
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count69,527
Oxford Nanopore Median Q Score23
Illumina Read Count3,072,010
Illumina Mean Coverage Depth118.043×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,072,010
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.67%
PassedEstimated genome contamination0.15%
PassedAverage depth of coverage118.043×
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