ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Lactobacillus
  • Lactobacillus jensenii

Lactobacillus jensenii (ATCC® 25258™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedMay 14, 2019
Length1,668,444 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N501,668,444 nt
%GC34.56%
Organism Summary
NameATCC® 25258™
IsolationVaginal discharge
TagsMSA ComponentType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS1,504
Number of Hypothetical Proteins516
Number of tRNA58
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count67,246
Oxford Nanopore Median Q Score16
Illumina Read Count4,503,597
Illumina Mean Coverage Depth695.5×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,503,597
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness98.83%
PassedEstimated genome contamination0%
PassedAverage depth of coverage695.5×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline