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- Salmonella enterica
- Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium (ATCC® 33068™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2024 |
| Length | 4,914,852 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 4,696,344 nt |
| %GC | 52.24% |
| Organism Summary | |
|---|---|
| Name | ATCC® 33068™ |
| Isolation | Mutant derived from strain LT2 |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,661 |
| Number of Hypothetical Proteins | 195 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 50,605 |
| Oxford Nanopore Median Q Score | 34 |
| Illumina Read Count | 5,360,548 |
| Illumina Mean Coverage Depth | 161.114× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,360,548
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.04%
PassedAverage depth of coverage161.114×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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