Organism Summary | |
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Catalog Number | ATCC® 19977™ |
Strain Alias | L948 [TMC 1543] |
Tags | Type Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | February 26, 2020 |
Length | 5,088,625 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (1 Circularized) |
N50 | 5,062,558 nt |
%GC | 64.15% |
Annotations Summary | |
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Number of CDS | 4989 |
Number of Hypothetical Proteins | 746 |
Number of tRNA | 47 |
Number of 5s rRNA | 1 |
Number of 16s rRNA | 1 |
Number of 23s rRNA | 1 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 2,110 |
Oxford Nanopore Median Q Score | 16 |
Illumina Read Count | 7,808,300 |
Illumina Mean Coverage Depth | 353.011× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 7,808,300 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 100% |
Estimated genome contamination | 0% |
Average depth of coverage | 353.011× |