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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 19435™ |
| Strain Alias | NCTC 6681 [BUCSAV 302, DSM 20481, NCDO 604, NCIB 6681, OJ] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | August 27, 2019 |
| Length | 2,590,315 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 2,518,724 nt |
| %GC | 35.38% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2561 |
| Number of Hypothetical Proteins | 380 |
| Number of tRNA | 65 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 44,364 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 5,060,895 |
| Illumina Mean Coverage Depth | 424.037× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 5,060,895 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.62% |
| Estimated genome contamination | 0.76% |
| Average depth of coverage | 424.037× |
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