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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 700874™ |
| Strain Alias | DSM 12286 [JCM 9738, NCIMB 13541, W.C. 1-72-9, arg-2] |
| Isolation | Salinas Grandes, Andes highlands |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 2, 2021 |
| Length | 3,292,346 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 3,070,622 nt |
| %GC | 65.64% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3357 |
| Number of Hypothetical Proteins | 639 |
| Number of tRNA | 47 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 131,511 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 9,637,637 |
| Illumina Mean Coverage Depth | 281.236× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 9,637,637 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 97.66% |
| Estimated genome contamination | 2.21% |
| Illumina depth of coverage | 281.236× |
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