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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-1120™ |
| Strain Alias | MM30 |
| Isolation | Sensor mutant derived from Vibrio campbellii strain BB120 (ATCC BAA-1116) |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 1, 2022 |
| Length | 6,065,542 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (2 Circularized) |
| N50 | 3,774,174 nt |
| %GC | 45.44% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5468 |
| Number of Hypothetical Proteins | 549 |
| Number of tRNA | 131 |
| Number of 5s rRNA | 13 |
| Number of 16s rRNA | 12 |
| Number of 23s rRNA | 12 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 196,729 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 24,990,804 |
| Illumina Mean Coverage Depth | 573.57× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 24,990,804 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.21% |
| Estimated genome contamination | 0.35% |
| Illumina depth of coverage | 573.57× |
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