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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® TSD-297™ |
| Strain Alias | MYC098 |
| Isolation | Water sample from the sewage treatment station of São Paulo Zoological Park Foundation (FPZSP), Brazil. Its location is between the parallels 23° 38’ 08” S and 23° 40’ 18” S and the meridians 46°36’48” W and 46°38’00” W |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 5,216,438 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (1 Circularized) |
| N50 | 4,918,770 nt |
| %GC | 67.84% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4860 |
| Number of Hypothetical Proteins | 707 |
| Number of tRNA | 67 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 378,659 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 18,678,080 |
| Illumina Mean Coverage Depth | 494.826× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 18,678,080 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.03% |
| Estimated genome contamination | 0.52% |
| Illumina depth of coverage | 494.826× |
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