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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 3,279,485 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (All Circularized) |
| Assembly Level | Complete |
| N50 | 2,644,427 nt |
| %GC | 66.66% |
| Organism Summary | |
|---|---|
| Name | ATCC® 13939™ |
| Isolation | Irradiated ground pork and beef |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,148 |
| Number of Hypothetical Proteins | 589 |
| Number of tRNA | 50 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 16,248 |
| Oxford Nanopore Median Q Score | 15 |
| Illumina Read Count | 5,099,026 |
| Illumina Mean Coverage Depth | 284.549× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,099,026
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.72%
PassedEstimated genome contamination0.21%
PassedAverage depth of coverage284.549×
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