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  • Bifidobacterium longum
  • Bifidobacterium longum subsp. infantis

Bifidobacterium longum subsp. infantis (ATCC® 25962™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedDecember 15, 2021
Length2,757,830 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N502,757,830 nt
%GC59.87%
Organism Summary
NameATCC® 25962™
IsolationIntestine
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS2,437
Number of Hypothetical Proteins1,276
Number of tRNA60
Number of 5s rRNA0
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count171,989
Oxford Nanopore Median Q Score23
Illumina Read Count10,247,182
Illumina Mean Coverage Depth499.654×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads10,247,182
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.46%
PassedAverage depth of coverage499.654×
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