ATCC® MYA-4561™ | Cryptococcus gattii

Overview

Annotations

Related Genomes

Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	17,747,240 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	20
Assembly Level	Scaffold
N50	1,679,954 nt
%GC	47.8%

Organism Summary
Name	ATCC® MYA-4561™
Genotype	VGII, AFLP6
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of BUSCO Annotations	714

Input Reads Summary
Oxford Nanopore Read Count	293,509
Oxford Nanopore Median Q Score	31
Illumina Read Count	64,705,838
Illumina Mean Coverage Depth	538.644×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads64,705,838

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.03%

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).

2 out of 2 passed

PassedEstimated genome completeness94.2%

PassedAverage depth of coverage538.644×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Cryptococcus gattii (ATCC® MYA-4561™)