Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 9533™ |
| Strain Alias | 640 [Emmons 640, NIH 640, QM 248] |
| Isolation | Clinical specimen |
| Tags | MSA Component |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2020 |
| Length | 23,492,081 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (0 Circularized) |
| N50 | 3,151,391 nt |
| %GC | 47.66% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 753 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 1,390,695 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 22,615,982 |
| Illumina Mean Coverage Depth | 190.079× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 22,615,982 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.55% |
| Average depth of coverage | 190.079× |
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline