ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Trichophyton
  • Trichophyton interdigitale

Trichophyton interdigitale (ATCC® 9533™)

Overview
Annotations
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 30, 2020
Length23,492,081 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs12
Assembly LevelScaffold
N503,151,391 nt
%GC47.66%
Organism Summary
NameATCC® 9533™
IsolationClinical specimen
TagsMSA Component
Biosafety Level2
Type StrainNo
Annotations Summary
Number of BUSCO Annotations747
Input Reads Summary
Oxford Nanopore Read Count1,390,695
Oxford Nanopore Median Q Score22
Illumina Read Count22,615,982
Illumina Mean Coverage Depth190.079×
Illumina Median Q Score38
ContigStartEndProtein ProductTypeOrthoDB Group

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads22,615,982
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

BUSCO Quality Control

Metrics assessing the assembly quality (from BUSCO).
2/2
2 out of 2 passed
PassedEstimated genome completeness98.55%
PassedAverage depth of coverage190.079×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline