Assembly Summary | |
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Date Published | April 29, 2024 |
Length | 2,188,935 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (1 Circularized) |
Assembly Level | Chromosome |
N50 | 1,632,936 nt |
%GC | 34.76% |
Organism Summary | |
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Name | ATCC® 51177™ |
Isolation | Freshwater mud |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Annotations Summary | |
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Number of CDS | 2,068 |
Number of Hypothetical Proteins | 272 |
Number of tRNA | 69 |
Number of 5s rRNA | 6 |
Number of 16s rRNA | 6 |
Number of 23s rRNA | 6 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 88,319 |
Oxford Nanopore Median Q Score | 34 |
Illumina Read Count | 13,228,574 |
Illumina Mean Coverage Depth | 887.121× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions