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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 39403™ |
| Strain Alias | JM103 |
| Genotype | F' traD36 proA+ proB+ lacIq delta(lacZ)M15 delta(pro-lac) supE hsdR endA1 sbcB15 thi-1 rpsL lambda- |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 4,845,325 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 4,520,176 nt |
| %GC | 50.68% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4620 |
| Number of Hypothetical Proteins | 134 |
| Number of tRNA | 88 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 29,077 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,840,395 |
| Illumina Mean Coverage Depth | 115.99× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,840,395 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.61% |
| Estimated genome contamination | 0.29% |
| Average depth of coverage | 115.99× |
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