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  • Aliivibrio
  • Aliivibrio fischeri

Aliivibrio fischeri (ATCC® 7744™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 28, 2020
Length4,503,036 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N502,970,643 nt
%GC38.32%
Organism Summary
NameATCC® 7744™
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,997
Number of Hypothetical Proteins1,657
Number of tRNA123
Number of 5s rRNA11
Number of 16s rRNA10
Number of 23s rRNA10
Input Reads Summary
Oxford Nanopore Read Count106,257
Oxford Nanopore Median Q Score27
Illumina Read Count14,701,614
Illumina Mean Coverage Depth433.709×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads14,701,614
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.59%
PassedEstimated genome contamination0.41%
PassedAverage depth of coverage433.709×
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