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  • Aliivibrio
  • Aliivibrio fischeri

Aliivibrio fischeri (ATCC® 49387™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedJune 1, 2021
Length4,449,015 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N502,602,841 nt
%GC38.35%
Organism Summary
NameATCC® 49387™
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS3,932
Number of Hypothetical Proteins1,618
Number of tRNA117
Number of 5s rRNA10
Number of 16s rRNA9
Number of 23s rRNA9
Input Reads Summary
Oxford Nanopore Read Count666,169
Oxford Nanopore Median Q Score27
Illumina Read Count12,171,220
Illumina Mean Coverage Depth380.878×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads12,171,220
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.59%
PassedEstimated genome contamination0.41%
PassedAverage depth of coverage380.878×
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