Organism Summary | |
---|---|
Catalog Number | ATCC® 27802™ |
Strain Alias | NCTC 9509 [105] |
Isolation | Mink |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | February 26, 2020 |
Length | 4,778,679 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (0 Circularized) |
N50 | 4,778,679 nt |
%GC | 47.57% |
Annotations Summary | |
---|---|
Number of CDS | 4275 |
Number of Hypothetical Proteins | 395 |
Number of tRNA | 81 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 619,698 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 4,026,483 |
Illumina Mean Coverage Depth | 156.718× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 4,026,483 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.87% |
Estimated genome contamination | 0.05% |
Average depth of coverage | 156.718× |