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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 208353™ |
| Strain Alias | W303-alpha or W303-1b |
| Genotype | MATalpha ade2-1 ura3-1 his3-11 trp1-1 leu2-3 leu2-112 can1-100 |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | February 21, 2025 |
| Length | 12,574,129 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 38 (0 Circularized) |
| N50 | 548,995 nt |
| %GC | 38.12% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 733 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 713,006 |
| Oxford Nanopore Median Q Score | 35 |
| Illumina Read Count | 25,508,728 |
| Illumina Mean Coverage Depth | 300.522× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 25,508,728 |
| Median Q score, all bases | 40 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 96.7% |
| Average depth of coverage | 300.522× |
Notes
This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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