ATCC® TSD-461™ | Akkermansia durhamii

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® TSD-461™
Strain Alias	RCC_12PD
Isolation	Human with renal cell carcinoma stool sample
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	March 24, 2025
Length	3,030,302 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (2 Circularized)
N50	2,281,956 nt
%GC	55.93%

Annotations Summary
Number of CDS	2465
Number of Hypothetical Proteins	677
Number of tRNA	51
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	226,353
Oxford Nanopore Median Q Score	35
Illumina Read Count	6,464,894
Illumina Mean Coverage Depth	528.895×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	6,464,894
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	97.28%
Estimated genome contamination	0.68%
Illumina depth of coverage	528.895×
ONT depth of coverage	236.996×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions