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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® TSD-229™ |
| Strain Alias | HSC-15S17 |
| Isolation | Water dripping from a sword fern beside the Bear Valley Trail, Point Reyes National Seashore |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 30, 2023 |
| Length | 7,597,573 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 7,597,573 nt |
| %GC | 64.03% |
| Annotations Summary | |
|---|---|
| Number of CDS | 6562 |
| Number of Hypothetical Proteins | 867 |
| Number of tRNA | 88 |
| Number of 5s rRNA | 9 |
| Number of 16s rRNA | 9 |
| Number of 23s rRNA | 9 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 58,219 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 7,084,395 |
| Illumina Mean Coverage Depth | 126.916× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 7,084,395 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.56% |
| Estimated genome contamination | 0.75% |
| Illumina depth of coverage | 126.916× |
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