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Overview
Genome Browser
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2023 |
| Length | 4,615,592 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 3,418,692 nt |
| %GC | 50.77% |
| Organism Summary | |
|---|---|
| Name | ATCC® 53496™ |
| Genotype | trp-31 his-1 argG6 rpsL104 tonA2 lacdelta(Z)r1 supE44 xyl-7 mtl-2 metB1 mcrB4::tn10 hsdR2 |
| Isolation | Derived from existing strain |
| Tags | |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4410 |
| Number of Hypothetical Proteins | 96 |
| Number of tRNA | 82 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 61,424 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 8,099,530 |
| Illumina Mean Coverage Depth | 259.229× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads8,099,530
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.01%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.37%
PassedEstimated genome contamination0.04%
PassedAverage depth of coverage259.229×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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