ATCC® 24202™ | Phaffia rhodozyma

Overview

Annotations

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® 24202™
Strain Alias	UCD 67-210 [ATCC 96587, CBS 5905, CCRC 21346, CCY 77-1-1, DSM 5626, IFO 10129, IGC 4172, NCYC 874, NRRL Y-10921]
Isolation	Japanese beech tree (Fagus crenata)
Tags	Type Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	November 26, 2024
Length	23,718,832 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	68 (0 Circularized)
N50	1,675,915 nt
%GC	47.32%

Annotations Summary
Number of BUSCO Annotations	714

Input Reads Summary
Oxford Nanopore Read Count	352,226
Oxford Nanopore Median Q Score	23
Illumina Read Count	90,684,012
Illumina Mean Coverage Depth	515.055×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	90,684,012
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

BUSCO Quality Control
Estimated genome completeness	94.2%
Average depth of coverage	515.055×

Notes

This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions