Organism Summary | |
---|---|
Catalog Number | ATCC® 28129™ |
Strain Alias | 31AA2 |
Isolation | Limburger cheese |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | February 21, 2025 |
Length | 25,395,347 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 26 (0 Circularized) |
N50 | 1,888,751 nt |
%GC | 41.47% |
Annotations Summary | |
---|---|
Number of BUSCO Annotations | 745 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 465,785 |
Oxford Nanopore Median Q Score | 31 |
Illumina Read Count | 38,855,208 |
Illumina Mean Coverage Depth | 224.169× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 38,855,208 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
---|---|
Estimated genome completeness | 98.3% |
Average depth of coverage | 224.169× |
This fungus was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions