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  • Desulfobacterium
  • Desulforapulum autotrophicum

Desulforapulum autotrophicum (ATCC® 43914™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length5,662,868 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N505,599,906 nt
%GC48.76%
Organism Summary
NameATCC® 43914™
IsolationMarine mud
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,923
Number of Hypothetical Proteins2,460
Number of tRNA52
Number of 5s rRNA8
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count109,097
Oxford Nanopore Median Q Score20
Illumina Read Count7,249,394
Illumina Mean Coverage Depth275.007×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads7,249,394
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.35%
PassedEstimated genome contamination1.29%
PassedAverage depth of coverage275.007×
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