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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 11696™ |
| Strain Alias | 60-1 [ICMP 5712, NCPPB 325] |
| Isolation | Tomato, Lycopersicon esculentum |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2019 |
| Length | 5,695,766 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 3,793,015 nt |
| %GC | 66.41% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5070 |
| Number of Hypothetical Proteins | 686 |
| Number of tRNA | 56 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 63,732 |
| Oxford Nanopore Median Q Score | 20 |
| Illumina Read Count | 3,967,321 |
| Illumina Mean Coverage Depth | 125.569× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 3,967,321 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 95.4% |
| Estimated genome contamination | 3.52% |
| Illumina depth of coverage | 125.569× |
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