Organism Summary | |
---|---|
Catalog Number | ATCC® 11696™ |
Strain Alias | 60-1 [ICMP 5712, NCPPB 325] |
Isolation | Tomato, Lycopersicon esculentum |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
---|---|
Date Published | October 30, 2019 |
Length | 5,695,766 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 3,793,015 nt |
%GC | 66.41% |
Annotations Summary | |
---|---|
Number of CDS | 5067 |
Number of Hypothetical Proteins | 709 |
Number of tRNA | 56 |
Number of 5s rRNA | 3 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 3 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 63,732 |
Oxford Nanopore Median Q Score | 20 |
Illumina Read Count | 3,967,321 |
Illumina Mean Coverage Depth | 125.569× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 3,967,321 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.94% |
Estimated genome contamination | 0.46% |
Average depth of coverage | 125.569× |