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  • Xanthomonas
  • Xanthomonas nasturtii

Xanthomonas nasturtii (ATCC® TSD-61™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedApril 1, 2022
Length4,926,527 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (1 Circularized)
Assembly SummaryChromosome
N503,020,490 nt
%GC64.43%
Organism Summary
NameATCC® TSD-61™
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS4,151
Number of Hypothetical Proteins1,960
Number of tRNA60
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count79,211
Oxford Nanopore Median Q Score23
Illumina Read Count22,430,841
Illumina Mean Coverage Depth637.434×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads22,430,841
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.36%
PassedAverage depth of coverage637.434×
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