ATCC® VR-573™ | Chlamydia trachomatis

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® VR-573™
Strain Alias	Trachoma type B strain HAR-36
Isolation	Human conjuctiva from a male with trachoma (trachoma II follicles and papillae).
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	March 24, 2025
Length	1,067,931 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	5 (4 Circularized)
N50	1,033,032 nt
%GC	41.23%

Annotations Summary
Number of CDS	909
Number of Hypothetical Proteins	154
Number of tRNA	40
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	343,021
Oxford Nanopore Median Q Score	35
Illumina Read Count	3,116,702
Illumina Mean Coverage Depth	344.423×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	3,116,702
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.92%
Estimated genome contamination	0%
Illumina depth of coverage	344.423×
ONT depth of coverage	283.073×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions