ATCC® VR-573™ | Chlamydia trachomatis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 24, 2025
Length	1,067,931 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	5 (4 Circularized)
Assembly Level	Chromosome
N50	1,033,032 nt
%GC	41.23%

Organism Summary
Name	ATCC® VR-573™
Isolation	Human conjuctiva from a male with trachoma (trachoma II follicles and papillae).
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	909
Number of Hypothetical Proteins	154
Number of tRNA	40
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	343,021
Oxford Nanopore Median Q Score	35
Illumina Read Count	3,116,702
Illumina Mean Coverage Depth	344.423×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads3,116,702

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.08%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.92%

PassedEstimated genome contamination0%

PassedAverage depth of coverage344.423×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia trachomatis (ATCC® VR-573™)