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- Varicellovirus canidalpha1
- Canid herpesvirus 1
Canid herpesvirus 1 (ATCC® VR-552™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 3, 2023 |
| Length | 114,562 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 3 |
| Assembly Level | Complete |
| N50 | 102,501 nt |
| %GC | 30.87% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-552™ |
| Isolation | Respiratory tract of a dog |
| Biosafety Level | 2 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 5,118,660 |
| Illumina Mean Coverage Depth | 1,085.749× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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