ATCC® BAA-1784™ | Arcanobacterium haemolyticum

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-1784™
Strain Alias	Vitek 1656
Isolation	Clinical isolate by University of Chicago
Tags	Methylation Data
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	April 29, 2024
Length	2,070,932 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	2,070,932 nt
%GC	53.18%

Annotations Summary
Number of CDS	1879
Number of Hypothetical Proteins	228
Number of tRNA	50
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	2,649,627
Oxford Nanopore Median Q Score	35
Illumina Read Count	10,413,778
Illumina Mean Coverage Depth	745.916×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	10,413,778
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	98.82%
Estimated genome contamination	0.59%
Illumina depth of coverage	745.916×
ONT depth of coverage	6,372.78×

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions