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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® MYA-4877™ |
| Strain Alias | A6MR38 [CBS 11545] |
| Genotype | VGIIc; AFLP6C |
| Isolation | Cerebrospinal fluid of immunicompetent human |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 17,527,853 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 16 (0 Circularized) |
| N50 | 1,322,777 nt |
| %GC | 47.81% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 743 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 268,075 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 44,512,734 |
| Illumina Mean Coverage Depth | 328.525× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 44,512,734 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 92.61% |
| Average depth of coverage | 328.525× |
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