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- Severe acute respiratory syndrome-related coronavirus
- Severe acute respiratory syndrome coronavirus 2
Severe acute respiratory syndrome coronavirus 2 (ATCC® VR-1986™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 29,941 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 1 |
| Assembly Level | Complete |
| N50 | 29,941 nt |
| %GC | 37.92% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1986™ |
| Genotype | 8782 C->T; 18060 C->T; 28144 T->C |
| Isolation | (2019-nCoV/USA-WA1/2020) Isolated from an oropharyngeal swab from a patient with a respiratory illness who had recently returned from travel to the affected region of China and developed clinical disease (COVID-19) in January 2020 in Washington, USA. |
| Biosafety Level | 3 |
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 10,314,949 |
| Illumina Mean Coverage Depth | 3,819.989× |
| Illumina Median Q Score | 38 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
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