Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 27808™ |
| Strain Alias | Se 6 [CCM 2753, DSM 43392, IMET 7518, IMRU W3960, JCM 3171, KCC A-0171, N667, NCIB 11222] |
| Isolation | Foam on activated sludge |
| Tags | Methylation DataType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | July 17, 2024 |
| Length | 5,331,008 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| N50 | 5,303,300 nt |
| %GC | 67.41% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4644 |
| Number of Hypothetical Proteins | 639 |
| Number of tRNA | 54 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 291,280 |
| Oxford Nanopore Median Q Score | 33 |
| Illumina Read Count | 8,454,880 |
| Illumina Mean Coverage Depth | 232.916× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 8,454,880 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.21% |
| Estimated genome contamination | 0.6% |
| Illumina depth of coverage | 232.916× |
| ONT depth of coverage | 167.025× |
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline