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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 16910™ |
| Strain Alias | WB 4548 [5729; IMUR 540, CBS 540.65, IMI 211392] |
| Genotype | ura3delta his3 : : URA3 trpl : : URA3 |
| Isolation | Skin of patient with lobomycosis |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 1, 2024 |
| Length | 27,191,008 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (0 Circularized) |
| N50 | 3,670,735 nt |
| %GC | 48.7% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 754 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 592,871 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 31,587,456 |
| Illumina Mean Coverage Depth | 144.486× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 31,587,456 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.81% |
| Average depth of coverage | 144.486× |
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