ATCC® BAA-3149™ | Lactiplantibacillus plantarum

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	3,296,869 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (All Circularized)
N50	3,237,190 nt
%GC	44.5%

Annotations Summary
Number of CDS	3078
Number of Hypothetical Proteins	381
Number of tRNA	70
Number of 5s rRNA	6
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	119,419
Oxford Nanopore Median Q Score	37
Illumina Read Count	20,606,838
Illumina Mean Coverage Depth	927.707×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	20,606,838
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.02%
Estimated genome contamination	1.39%
Illumina depth of coverage	927.707×
ONT depth of coverage	179.786×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions