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Overview
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-3441™ |
| Strain Alias | A/Connecticut/11/2023(H1N1)pdm09 |
| Isolation | Nasopharyngeal swab of a pediatric human with flu-like symptoms, October 14, 2023 in Connecticut, USA, and isolated at the CDC in February 2024. |
| Biosafety Level | 2 |
Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 |
| Length | 12,663 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 7 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 2,236 nt |
| %GC | 42.98% |
Annotations Summary |
|---|
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,268,436 |
| Illumina Mean Coverage Depth | 678.04× |
| Illumina Median Q Score | 38 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was assembled and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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