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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43272™ |
| Strain Alias | JCM 2952 [DSM 6835, IAM 1568, KS 0036; AJ 2197; L-1] |
| Isolation | Rice (Oryza sativa) |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | May 3, 2022 |
| Length | 5,064,323 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 5,064,323 nt |
| %GC | 66.16% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4619 |
| Number of Hypothetical Proteins | 354 |
| Number of tRNA | 69 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 23,750 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 12,475,023 |
| Illumina Mean Coverage Depth | 334.911× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 12,475,023 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.11% |
| Average depth of coverage | 334.911× |
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