ATCC® 27061™ | Achromobacter xylosoxidans

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 27061™
Strain Alias	KM 543 [CCUG 12689, CIP 71.32, DSM 10346, DSM 2402, EY 543, GIFL 543, IFO 15126, JCM 9659, LMG 1863, NCTC 10807, NRRL B-4082, R. Hugh 2838]
Isolation	Ear discharge
Tags	Methylation DataType Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	September 4, 2024
Length	6,784,538 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	3 (0 Circularized)
N50	4,831,160 nt
%GC	67.38%

Annotations Summary
Number of CDS	6205
Number of Hypothetical Proteins	571
Number of tRNA	53
Number of 5s rRNA	4
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	32,846
Oxford Nanopore Median Q Score	34
Illumina Read Count	10,022,242
Illumina Mean Coverage Depth	217.06×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	10,022,242
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	93.72%
Estimated genome contamination	6.12%
Illumina depth of coverage	217.06×
ONT depth of coverage	21.374×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions